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文章:

罗马尼亚非小细胞肺癌患者的基因组图谱:基于PATHOS分子病理学实验室Oncomine™ Dx Express检测常规NGS测试的深入分析

The Genomic Landscape of Romanian Non-Small Cell Lung Cancer Patients: The Insights from Routine NGS Testing with the Oncomine™ Dx Express Test at the PATHOS Molecular Pathology Laboratory

原文发布日期:11 June 2025

DOI: 10.3390/cancers17121947

类型: Article

开放获取: 是

 

英文摘要:

Background:Comprehensive molecular profiling is essential for precision oncology in non-small cell lung cancer (NSCLC). However, genomic data from Eastern European populations, including Romania, remain limited.Methods:We analyzed 398 consecutive NSCLC cases tested at the PATHOS Molecular Pathology Laboratory (Cluj-Napoca, Romania) between April 2024 and February 2025 using the Ion Torrent™ Genexus™ System and the Oncomine™ Dx Target Test, which evaluates SNVs/indels in 46 genes, fusions in 23 genes, and CNVs in 19 genes from FFPE samples.Results: The cohort was predominantly male (66%) with a median age of 67 years. Adenocarcinoma represented 70% of cases with known histology. Genomic profiling revealed a high frequency of actionable alterations.KRASmutations were the most common (29.1%), with p.G12C detected in 10.3% of all the cases.EGFRmutations were present in 14.3% of patients, mostly exon 19 deletions and L858R substitutions.BRAFalterations (5.3%) included both V600E and non-V600E variants. RET alterations were detected as eight missense mutations, two canonical fusions (KIF5B–RET,CCDC6–RET), one amplification, and three transcript imbalances.EML4-ALKfusions (1.77%),ERBB2mutations/amplifications (3.0%), andFGFR1/FGFR3amplifications were also observed.Conclusions: This study provides the first large-scale molecular snapshot of NSCLC in Romania. While the overall genomic profiles align with Western populations, the higher frequency of KRAS p.G12C andFGFRamplifications highlights the value of region-specific data to support targeted therapies in Eastern Europe.

 

摘要翻译: 

背景:全面的分子谱分析对于非小细胞肺癌(NSCLC)的精准肿瘤治疗至关重要。然而,包括罗马尼亚在内的东欧人群基因组数据仍然有限。 方法:我们分析了2024年4月至2025年2月期间在PATHOS分子病理学实验室(罗马尼亚克卢日-纳波卡)连续检测的398例NSCLC病例,使用Ion Torrent™ Genexus™系统和Oncomine™ Dx Target Test对福尔马林固定石蜡包埋(FFPE)样本进行了检测,该检测可评估46个基因的单核苷酸变异/插入缺失、23个基因的融合以及19个基因的拷贝数变异。 结果:该队列以男性为主(66%),中位年龄为67岁。在已知组织学类型的病例中,腺癌占70%。基因组谱分析显示可干预的基因改变频率较高。KRAS突变最为常见(29.1%),其中p.G12C突变在所有病例中占10.3%。EGFR突变存在于14.3%的患者中,主要为19号外显子缺失和L858R替换。BRAF改变(5.3%)包括V600E和非V600E变异。检测到的RET改变包括8个错义突变、2个典型融合(KIF5B–RET、CCDC6–RET)、1个扩增和3个转录本失衡。此外还观察到EML4-ALK融合(1.77%)、ERBB2突变/扩增(3.0%)以及FGFR1/FGFR3扩增。 结论:本研究首次提供了罗马尼亚NSCLC的大规模分子特征概览。虽然整体基因组特征与西方人群一致,但KRAS p.G12C突变和FGFR扩增频率较高,凸显了区域特异性数据对于支持东欧靶向治疗的价值。

 

 

原文链接:

The Genomic Landscape of Romanian Non-Small Cell Lung Cancer Patients: The Insights from Routine NGS Testing with the Oncomine™ Dx Express Test at the PATHOS Molecular Pathology Laboratory

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